Skip to main content

Conditions to use different Schrodinger Equation forms


Every molecular system has an energy associated with it. This energy might show a shift depending on the surrounding environment or internal variations. Magnetic dipoles present in a molecular system in the form of electrons and the nuclei is one such reason for the energy shift. But the effect of these magnetic dipoles on the energy shifts will be much less which can be accounted by considering perturbation theory. Chemical binding energies on the other hand are responsible for the major shifts in energy of a molecular system. Thus the focus is shifted towards the valence electrons responsible for most of the chemical activity of a molecule. The valence electrons are separated from the core electrons. The core electrons are treated approximately. This reduces the efforts of considering the relativistic effects affecting the core electrons, and thus can now be ignored.

What are relativistic effect?
It has been nicely explained by Ermler and Pitzer in the introduction of their review on Relativisitic effects on chemical systems in Annual Review of Physical Chemistry (1985). As explained by them, velocity of light c is finite. But theoretical calculations often make the approximation of considering it to be ∞. This approximation works for light atoms like H,C,N,O. But for heavy elements, this non relativistic approximation of considering c as ∞ doesn't hold. Thus the relativistic effects are the differences between calculation for the correct value of the velocity of light and the results for c= ∞. This can be taken care of for c=∞ by working with Dirac equation yielding electron spin, or by supplementing the Schrodinger equation with an ad hoc assumption about spin.

The non relativistic Schrondinger equation without magnetic effects can then be used to obtain the structure and reactivity of molecular systems and systems in Solid state.

While the time independent Schrodinger equation is sufficient for the structure characterization of a molecular system, its interaction with electromagnetic radiation requires time dependent Schrodinger equation.

The post used work from following links




Comments

Popular posts from this blog

Material Studio - selective molecule movement

So, working with Material Studio is awesome. You get to handle bigger, complicated and even unimaginable system. But I am facing problems in very minute functioning. I recently faced two problems, but managed to resolve on my own. Somehow, tutorials doesn't help in resolving them and you end up doing some exercise on your own to get the solution. Among these, the problem of bringing two molecular structures in one window and then adjusting one molecule by moving it around, while other structure remains untouched, as it is. Actually, this should not be a problem to do. There is a simple way of doing this. Select the molecule to be moved and then there is a symbol (button) to select, which allows you to selectively move that molecule only. This is the same way it can be done in Material studio too.  But among all the dozens of symbols, the new person handling MS, kind of gets lost. So, what he does is check the tutorials, for any help. But the tutorials don't talk about suc...

How would COVID bahave in August - few projections

Entering August with COVID by side   Entering in the month of August, COVID is still here by our side. Situation seems grim, worse than earlier, as number of active cases as well as the count of deceased patients are increasing day by day. Yesterday we crossed the mark of 50,000 cases in a day. Closely competing with Brazil with US counts also in range now. On the other side, few other numbers like reduced mortality rate to 2.18%, recovery rate of 64.6% and slightly increased doubling rate of 21 days can reduce the anxiety. My projections of 16.75 lakhs for India might be crossed by coupe of thousands of more cases after today’s count is added. This number would reach to a huge count of 28.5 lakhs by August 15. Maharashtra just doesn’t like competition. Just like what Delhi tried few days back, Andhra Pradesh also managed to cross Maharashtra’s per day count for2 consecutive days. Seems like not a good idea. Maharashtra immediately went to the next zone. The state which w...

Rigorous method to create lib file

Sometimes you totally fail to go ahead with the prepin and frcmod files you have generated from the newly generated PDB file even after you follow the procedure given in previous two posts. And you keep wondering? In such a case you need a more detailed procedure. First take a look at the pdb file. For example: Here is one such pdb file generated from the gabedit that troubled me for some time. --------------- HEADER    PROTEIN COMPND    UNNAMED AUTHOR    GENERATED BY GABEDIT 2.3.8 at Tue Jul 26 16:53:48 2011 ATOM  1      C   C     1       -2.907  -0.997  -0.385  1.00  300.00          C 0.0000   ATOM  2      N   N     1       -2.060  -0.981  -1.189  1.00  300.00 ...